Autoimmune Diseases - Comprehensive Overview

Complete tutorial on autoimmune diseases including systemic lupus erythematosus, rheumatoid arthritis, multiple sclerosis, type 1 diabetes, Hashimoto thyroiditis, Graves disease, Sjogren syndrome, scleroderma, vasculitis, and sarcoidosis. Covers common mechanisms, diagnosis, and immunosuppressive treatments from NIH and CDC sources.

This content is for informational purposes only. Always consult a healthcare professional.

Autoimmune diseases are a diverse group of disorders characterized by loss of self-tolerance, leading to immune-mediated attack on healthy tissues. They affect approximately 5-10% of the global population, with a strong female predominance (78% of cases). This article covers common mechanisms, major autoimmune diseases, diagnostic approaches, and treatment principles.

Common Mechanisms of Autoimmunity

Key Concepts in Autoimmune Pathogenesis

Concept Description Examples
Loss of central tolerance Failure to eliminate self-reactive T and B cells during development in thymus and bone marrow AIRE deficiency, APECED
Loss of peripheral tolerance Failure to control self-reactive lymphocytes that escape central selection FOXP3 mutation, IPEX syndrome
Molecular mimicry Immune response to a pathogen cross-reacts with self-antigens Rheumatic fever, Guillain-Barre
Epitope spreading Initial immune response spreads to other self-epitopes RA Citrullination spread
Bystander activation Local inflammation activates self-reactive lymphocytes non-specifically Post-infectious autoimmune flares
Cryptic antigens Normally hidden self-antigens exposed after tissue damage Post-traumatic sympathetic ophthalmia

Autoimmune Disease Groups

Category Description Examples
Organ-specific Autoimmunity against a single organ Type 1 diabetes, Hashimoto, Graves, Addison, myasthenia gravis
Systemic Multiple organs involved SLE, RA, Sjogren, scleroderma, dermatomyositis, vasculitis
Intermediate Organ-specific with systemic features IBD, MS, primary sclerosing cholangitis

Common Autoantibodies

Autoantibody Associated Diseases Sensitivity Specificity
ANA SLE, other CTDs 95% (SLE) Low
Anti-dsDNA SLE (active nephritis) 60-80% >95%
Anti-Smith SLE 20-30% >95%
Anti-Ro/SSA Sjogren, SLE (SCLE, neonatal lupus) 60-70% (Sjogren) Moderate
Anti-La/SSB Sjogren, SLE 40-50% (Sjogren) High
Anti-Scl-70 Systemic sclerosis (diffuse) 20-30% >95%
Anti-centromere Limited systemic sclerosis (CREST) 50-70% >95%
c-ANCA (PR3) Granulomatosis with polyangiitis 80-90% >95%
p-ANCA (MPO) Microscopic polyangiitis 70-80% >95%
Anti-CCP Rheumatoid arthritis 70-80% 95-98%
RF RA, other CTD, infections 60-80% (RA) Low
Anti-TPO Hashimoto (90%), Graves (70%) >90% Moderate
Anti-thyroglobulin Hashimoto 60-80% Moderate

Systemic Lupus Erythematosus (SLE)

See Musculoskeletal Disorders article for detailed SLE coverage.

Key Points

  • Prototypic systemic autoimmune disease with multi-organ involvement
  • F:M ratio 9:1; peak age 15-45
  • Loss of tolerance to nuclear antigens (ANA positive in >95%)
  • Clinical: malar rash, discoid rash, photosensitivity, arthritis, serositis, nephritis, neuropsychiatric, hematologic
  • Treatment: HCQ (all patients), corticosteroids, MMF, cyclophosphamide, azathioprine, belimumab, anifrolumab

Rheumatoid Arthritis (RA)

See Musculoskeletal Disorders article for detailed RA coverage.

Multiple Sclerosis (MS)

See Neurological Disorders article for detailed MS coverage.

Type 1 Diabetes (T1DM)

See Endocrine Disorders article for detailed T1DM coverage.

Hashimoto Thyroiditis

Parameter Detail
Definition Chronic autoimmune thyroiditis, most common cause of hypothyroidism in iodine-sufficient areas
Prevalence 5-10% of population; F:M 5-10:1
Pathophysiology CD4+ and CD8+ T-cell infiltration, Th1 response, gradual destruction of thyroid follicles; autoantibodies to TPO and thyroglobulin
Clinical Goiter (firm, rubbery), hypothyroidism symptoms (fatigue, weight gain, cold intolerance, constipation, dry skin, hair loss, depression)
Diagnosis Elevated TSH, low free T4, positive anti-TPO (>95%) and/or anti-thyroglobulin; ultrasound with diffuse hypoechogenicity
Treatment Levothyroxine lifelong; monitor TSH

Graves Disease

Parameter Detail
Definition Autoimmune hyperthyroidism caused by stimulatory TSH receptor autoantibodies (TSI)
Prevalence 1% of population; F:M 5-10:1
Pathophysiology TSI binds to TSH receptor, constitutive activation, increased T4/T3 production; stimulates orbital fibroblasts causing ophthalmopathy
Clinical Tachycardia, weight loss, heat intolerance, tremor, anxiety, goiter (diffuse, bruit), ophthalmopathy (proptosis, lid retraction), dermopathy (pretibial myxedema)
Diagnosis Low TSH, high free T4/T3, positive TSI; RAI uptake diffusely increased
Treatment Methimazole (first-line), RAI-131, thyroidectomy; beta-blockers for symptom control

Sjogren Syndrome

Parameter Detail
Definition Chronic autoimmune disorder with lymphocytic infiltration of exocrine glands (sicca syndrome)
Prevalence 0.1-0.5%; F:M 9:1; peak age 40-60
Pathophysiology Autoimmune attack on salivary and lacrimal glands and systemic involvement
Sicca symptoms Xerophthalmia (dry eyes), xerostomia (dry mouth), parotid enlargement
Systemic Arthralgias, ILD, interstitial nephritis (RTA), peripheral neuropathy, purpura, Raynaud
Lymphoma risk 5-10x increased NHL risk (MALT, DLBCL)
Diagnosis Anti-Ro/SSA antibodies, labial gland biopsy with focus score >=1, ocular staining, Schirmer test
Treatment Artificial tears, pilocarpine/cevimeline for sicca; HCQ, immunosuppression for systemic; rituximab for severe/lymphoma

Systemic Sclerosis (Scleroderma)

Parameter Detail
Definition Chronic autoimmune disease with fibrosis of skin and internal organs, vasculopathy, immune dysregulation
Prevalence 1-3 per 10,000; F:M 3-6:1; peak age 30-60
Subtypes Limited (lcSSc, distal skin, CREST) vs Diffuse (dcSSc, proximal/truncal skin, more internal organ involvement)

Scleroderma Subtypes

Feature Limited (lcSSc/CREST) Diffuse (dcSSc)
Skin distribution Distal to elbows/knees, face Proximal to elbows/knees, trunk
Calcinosis Common Less common
Raynaud phenomenon Nearly universal Nearly universal
Pulmonary fibrosis Less common More common
Pulmonary hypertension Late, more common Can occur
Renal crisis Rare 15-20% (early)
Anti-centromere 50-70% <5%
Anti-Scl-70 <10% 20-30%

Scleroderma Organ Involvement and Treatment

Organ Manifestation Treatment
Skin Fibrosis, thickening, sclerodactyly, digital ulcers Mycophenolate mofetil, methotrexate, cyclophosphamide; bosentan/iloprost for digital ulcers
Raynaud phenomenon Severe vasospasm, digital ischemia CCB (nifedipine, amlodipine), PDE5 inhibitors (sildenafil), prostacyclin analogs (iloprost)
Pulmonary fibrosis ILD (most common cause of death in dcSSc) Cyclophosphamide or mycophenolate mofetil; nintedanib (antifibrotic)
Pulmonary hypertension PAH (most common cause of death in lcSSc) Bosentan (endothelin receptor antagonist), sildenafil/tadalafil (PDE5i), riociguat, prostacyclin analogs (epoprostenol, treprostinil)
GI Esophageal dysmotility, GERD, dysphagia, pseudo-obstruction, malabsorption, SIBO PPI, prokinetics (metoclopramide, domperidone), rotating antibiotics for SIBO, nutritional support
Renal Scleroderma renal crisis (sudden severe HTN, AKI, microangiopathy) ACE inhibitors (first-line, high-dose captopril), dialysis if needed
Cardiac Myocardial fibrosis, diastolic dysfunction, arrhythmias, pericarditis Management of risk factors, antiarrhythmics, diuretics
Calcinosis Painful calcium deposits in skin Surgical excision (if symptomatic), minocycline, colchicine
Telangiectasias Dilated superficial capillaries Laser therapy (if bleeding or cosmetic)

Vasculitis

Classification by Vessel Size

Vessel Size Disease ANCA Key Features Treatment
Large vessel Giant cell arteritis (GCA) No Age >50, headache, scalp tenderness, jaw claudication, visual loss; PMR overlap High-dose corticosteroids (prednisone); tocilizumab
Large vessel Takayasu arteritis No Age <40, pulseless, claudication, aortic arch involvement (PANDA) Corticosteroids, methotrexate, tocilizumab, TNFi
Medium vessel Polyarteritis nodosa (PAN) No (rarely p-ANCA) Mononeuritis multiplex, livedo reticularis, renal (ANEURYSMS, not GN), testicular pain, myalgias Corticosteroids, cyclophosphamide (if severe)
Medium vessel Kawasaki disease No Children, fever >5 days, conjunctivitis, rash, strawberry tongue, cervical lymphadenopathy, coronary aneurysms IVIG + aspirin
Small vessel Granulomatosis with polyangiitis (GPA, Wegener) c-ANCA (PR3) 90% Necrotizing granulomatous inflammation: upper/lower respiratory tract (nodules, cavitary lesions, sinusitis, saddle nose), GN, mononeuritis Corticosteroids + rituximab or cyclophosphamide
Small vessel Microscopic polyangiitis (MPA) p-ANCA (MPO) 75% Pauci-immune GN, pulmonary capillaritis (DAH), mononeuritis multiplex Corticosteroids + rituximab or cyclophosphamide
Small vessel Eosinophilic granulomatosis with polyangiitis (EGPA, Churg-Strauss) p-ANCA (MPO) 40-50% Asthma, eosinophilia, sinusitis, pulmonary infiltrates, neuropathy, GN, cardiac involvement Corticosteroids, mepolizumab (anti-IL5), cyclophosphamide if severe
Small vessel IgA vasculitis (Henoch-Schonlein purpura) No Palpable purpura (lower extremities), arthritis, abdominal pain, GN (IgA deposits) Supportive (self-limited in children); corticosteroids for severe
Small vessel Anti-GBM disease (Goodpasture) Anti-GBM antibodies Linear IgG along GBM; RPGN + pulmonary hemorrhage Plasmapheresis + corticosteroids + cyclophosphamide
Small vessel Cryoglobulinemic vasculitis Mixed cryoglobulins (type II: IgM RF + HCV) Palpable purpura, arthritis, neuropathy, GN (membranoproliferative) Treat HCV (DAAs), rituximab, corticosteroids, plasmapheresis

Sarcoidosis

Parameter Detail
Definition Multi-system granulomatous disorder of unknown cause characterized by non-caseating granulomas
Prevalence 10-40 per 100,000; more common in African Americans (3-4x), Scandinavians; F:M ~2:1
Peak age 20-40 years
Pathophysiology Unknown trigger (antigen) -> CD4+ Th1 immune response -> macrophage activation -> non-caseating granuloma formation -> fibrosis (chronic)

Sarcoidosis Organ Involvement

Organ Frequency Manifestations Treatment
Pulmonary >90% Bilateral hilar lymphadenopathy (BHL, stage I), interstitial infiltrates (stage II), fibrosis (stage IV); cough, dyspnea Observation (stage I often resolves); corticosteroids (first-line), methotrexate, azathioprine, mycophenolate, TNF inhibitors (infliximab)
Lymph nodes 75-90% Peripheral lymphadenopathy (cervical, axillary, inguinal), BHL Same as pulmonary
Skin 25-35% Erythema nodosum (EN, acute, good prognosis), lupus pernio (chronic, disfiguring, poor prognosis), maculopapular lesions, scar infiltration Topical corticosteroids, hydroxychloroquine, methotrexate, TNF inhibitors; laser for lupus pernio
Eyes 20-30% Uveitis (anterior > posterior), dry eyes, conjunctival nodules Topical corticosteroids (anterior); systemic corticosteroids, methotrexate, TNF inhibitors (posterior)
Cardiac 5-10% (subclinical 25%) Conduction abnormalities (heart block), arrhythmias (VT), heart failure, sudden death Corticosteroids, methotrexate, biologics; ICD for arrhythmias; cardiac MRI/PET for diagnosis
Neurologic 5-10% Cranial neuropathies (CN VII most common - Bell palsy), aseptic meningitis, parenchymal brain lesions, myelopathy, hydrocephalus, peripheral neuropathy High-dose corticosteroids, methotrexate, cyclophosphamide, TNF inhibitors
Hepatic 20-30% Elevated LFTs (asymptomatic), intrahepatic cholestasis, portal hypertension (rare) Observation; corticosteroids if severe
Hypercalcemia 10-20% 1,25-(OH)2 vitamin D produced by activated macrophages Avoid sunlight/calcium/vitamin D; corticosteroids, hydroxychloroquine, ketoconazole
Musculoskeletal 10-20% Arthralgias, acute arthritis (Lofgren syndrome: EN + BHL + ankle arthritis - excellent prognosis), chronic arthritis (rare), osseous lesions NSAIDs, corticosteroids, HCQ

Sarcoidosis Treatment

Severity Treatment Notes
Asymptomatic (stage I BHL) Observation 60-80% spontaneous remission within 2 years
Mild-moderate (symptomatic, no organ-threatening) NSAIDs, corticosteroids (prednisone 20-40 mg/day, taper over 6-12 months) First-line for active disease
Chronic or corticosteroid-sparing Methotrexate (first-line steroid-sparing) Monitor LFTs, CBC, pulmonary function
Refractory Azathioprine, leflunomide, mycophenolate mofetil, hydroxychloroquine Second-line agents
Severe/refractory TNF inhibitors (infliximab, adalimumab) For neurologic, cardiac, severe pulmonary, lupus pernio
Organ-threatening Cyclophosphamide Rare; for life-threatening refractory disease

Immunosuppressive Treatments

Drug Class Examples Mechanism Key Uses Key Toxicities
Glucocorticoids Prednisone, methylprednisolone Broad anti-inflammatory (NF-kB, AP-1, cytokines) Induction for most autoimmune diseases Osteoporosis, diabetes, HTN, weight gain, cataracts, infections, avascular necrosis, mood changes
Antimalarials Hydroxychloroquine TLR inhibition, antigen presentation modulation SLE, RA (mild), Sjogren Retinopathy (dose/duration-related), myopathy
Methotrexate Methotrexate DHFR inhibition, adenosine, anti-inflammatory RA, psoriasis, myositis, sarcoidosis Hepatotoxicity, pneumonitis, myelosuppression, teratogenicity (check T-SPOT-TB, LFTs, CBC)
Leflunomide Leflunomide DHODH inhibition (pyrimidine synthesis) RA, psoriatic arthritis Hepatotoxicity, diarrhea, hypertension, teratogenicity
Mycophenolate mofetil Mycophenolate IMPDH inhibition (purine synthesis) Lupus nephritis, myositis, vasculitis, scleroderma ILD Gastrointestinal (diarrhea, nausea), myelosuppression, teratogenicity
Azathioprine Azathioprine Purine synthesis inhibition SLE, RA, vasculitis, myositis, IBD Hepatotoxicity, myelosuppression, pancreatitis, nausea, lymphoma risk
Cyclophosphamide Cyclophosphamide DNA alkylation, cell cycle non-specific Lupus nephritis, vasculitis, myositis Hemorrhagic cystitis, myelosuppression, infertility, malignancy, teratogenicity
Cyclosporine Cyclosporine Calcineurin inhibition (T-cell IL-2) RA, psoriasis, nephrotic syndrome Nephrotoxicity, HTN, hirsutism, gingival hyperplasia, drug interactions
Tacrolimus Tacrolimus Calcineurin inhibition Lupus nephritis, myositis, organ transplant Nephrotoxicity, HTN, diabetes, neurotoxicity
TNF inhibitors Infliximab, adalimumab, etanercept, certolizumab, golimumab TNF-alpha neutralization RA, AS, PsA, psoriasis, IBD, sarcoidosis TB/HBV reactivation, infections, injection/infusion reactions, demyelinating disease, HF, lymphoma (slight)
Rituximab Rituximab CD20 B-cell depletion RA, vasculitis, SLE, pemphigus, myositis Infusion reactions, HBV reactivation, PML (rare), hypogammaglobulinemia
Belimumab Belimumab BAFF/BLyS inhibition (B-cell survival) SLE Nausea, diarrhea, infections, infusion reactions
Anifrolumab Anifrolumab IFNAR1 blockade (type I IFN) SLE Herpes zoster, URI, infusion reactions
Tocilizumab Tocilizumab IL-6 receptor blockade RA, GCA, cytokine release syndrome Neutropenia, LFT elevation, infections, GI perforation
Abatacept Abatacept CTLA4-Ig (T-cell costimulation blockade) RA Infection risk, infusion reactions
JAK inhibitors Tofacitinib, baricitinib, upadacitinib JAK-STAT blockade RA, PsA, IBD, AD Zoster (VZV), infections, thrombosis, LFT elevation, lipid elevation